PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1695s0026.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 134aa    MW: 14605.3 Da    PI: 8.7381
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1695s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.26.3e-107796120
                 GATA  1 CsnCgttkTplWRrgpdgnk 20
                         C+nC tt+TplWR+gp+g+k
  Cagra.1695s0026.1.p 77 CANCDTTSTPLWRNGPRGPK 96
                         ******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-471106IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.26671124IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-57495No hitNo description
Gene3DG3DSA:3.30.50.106.8E-87596IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-77796IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGFSMFFSSE NDVVHHSSPY ASVDCTLSLG TPSTRLCNDD DERRFSSHTS NALGWDFLNG  60
AKKGGGGGGN NLLARRCANC DTTSTPLWRN GPRGPKPSIQ SQIKSKLNGF LKLLCYQDNY  120
IYKQIQSYVS ATQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937211e-117AB493721.1 Arabidopsis thaliana At4g36620 mRNA for hypothetical protein, partial cds, clone: RAAt4g36620.
GenBankAL1615891e-117AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankAY5307461e-117AY530746.1 Arabidopsis thaliana At4g36620 gene, partial cds.
GenBankBT0295061e-117BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds.
GenBankCP0026871e-117CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997081e-117Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286076.12e-65hypothetical protein CARUB_v10007612mg
SwissprotQ6QPM21e-54GAT19_ARATH; GATA transcription factor 19
TrEMBLR0GQ272e-65R0GQ27_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__409__AT4G36620.13e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.18e-50GATA transcription factor 19